Summarized Procurement Plan I. GENERAL Project Information Country: South Africa Project Name: Accelerating Genomics-based Surveillance for COVID-19 Response in South Africa Project ID: P 177439 Project Implementation Agency: Stellenbosch University Date of the Procurement Plan: August 2022 Period Covered by this procurement plan: 18 months II. Goods and Works and Non-Consulting Services. 1. Prior Review Threshold: Procurement Decisions subject to Prior Review by IDA as stated in the Procurement Regulations for IPF Borrowers: Thresholds for Procurement Methods and Prior Review Goods, Works and Non- Consulting Services Procurement Approaches and Methods (US$ Prior millions) Review Category Open Open Request for (US$ millions) International National Quotation (RfQ) Works ≥ 10 ≥ 20 < 20 ≤ 0.2 Goods, IT, and non- ≥2 ≥5 <5 ≤ 0.1 consulting services 2. Reference to (if any) Project Operational/Procurement Manual: N/A 3. Procurement Packages with Methods and Time Schedule Procurement of Goods & Non-consulting Services Summary 1 1 2 3 4 5 6 7 Ref. Description Estimated Packages Domestic Review Comments No. Cost Preference by Bank US$ million (yes/no) (Prior / Post) Summary of the ICB Nil Nil Nil Nil No Works Contracts (Works) Summary of the NCB Nil Nil NIL Nil No Works Contracts (Works) Summary of the ICB Nil Nil Nil Nil (Goods) Summary of the NCB 1.67 1 NIL Post (Goods) Summary of the RfQ 0.16M 8 NIL Post (Goods & Non- Consulting Services) Summary of the DC 1.285 11 NIL Post (Goods) III. Selection of Consultants 1. Prior Review Threshold: Selection decisions subject to Prior Review by Bank as stated in the Procurement Regulations for IPF Borrowers: Thresholds for Consultants Selection Methods and Prior Review Thresholds for Consultants Selection Methods and Prior Review for Consulting Services Category Prior Short List of National Consultants (US$ million) Review Consulting Engineering and (US$ Services Construction Supervision millions) Consultants (Firms) ≥1 ≤ 0.3 ≤ 0.3 2 Individual Consultants ≥ 0.3 NA. NA. 2. Short list comprising entirely of national consultants: Short list of consultants for services, estimated to cost less than $ 300,000 equivalent per contract, may comprise entirely of national consultants in accordance with the provisions of the Procurement Regulations for IPF Borrowers. 3. Terms of Reference (TOR) for all consultancy contracts as well as all direction selections, irrespective of the contract value, will be subject to prior review. 4. Any Other Special Selection Arrangements: N/A 5. Consultancy Assignments with Selection Methods and Time Procurement of Consulting Services Summary 1 2 3 4 5 6 Ref. No. Description of Estimated Package Review Comments Assignment Cost s by Bank (Prior / US$ million Post) Summary of Nil Nil N/A contracts through QCBS Summary of Nil Nil N/A contracts through CQS Summary of 0.93M 13 Post contracts through IC 3 PROCUREMENT South Africa : Accelerating Genomics-based Surveillance for COVID-19 Response in South Africa PLAN General Information Country: South Africa 2022-08-22 Bank’s Approval Date of the Original Procurement Plan: 2022-09-28 Revised Plan Date(s): (comma delineated, leave blank if none) Project ID: P177439 GPN Date: 2022-08-10 Project Name: Accelerating Genomics-based Surveillance for COVID-19 Response in South Africa Loan / Credit No: TF / B8412 Stellenbosch University Executing Agency(ies): WORKS Activity Reference No. / Estimated Actual Am Bid Evaluation Report Loan / Credit N Market Approac Procurement Pro Prequalification High SEA/SH R Procurement D Process St Draft Pre-qualification Prequalification Evalu Draft Bidding Docum Specific Procurement Bidding Documents a Proposal Submission / Contract Complet Description Component Review Type Method Amount (U ount (US$ and Recommendation Signed Contract o. h cess (Y/N) isk ocument Type atus Documents ation Report ent / Justification Notice / Invitation s Issued Opening / Minutes ion S$) ) for Award Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned GOODS Activity Reference No. / Bid Evaluation Report Loan / Credit N Market Approac Procurement Pro Prequalification Estimated Am Actual Amount Process St Draft Pre-qualification Prequalification Evalu Draft Bidding Docum Specific Procurement Bidding Documents a Proposal Submission / Description Component Review Type Method and Recommendation Signed Contract Contract Completion o. h cess (Y/N) ount (US$) (US$) atus Documents ation Report ent / Justification Notice / Invitation s Issued Opening / Minutes for Award Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Expanding the NGS-SA capa ZA-SUN-288091-GO-RFQ / N Under Imple TF / B8412 city and training staff for ge Post Direct Selection Direct - National 535,715.00 0.00 2022-09-11 2022-09-19 2022-09-18 2022-10-03 2022-12-15 extseq2000 instrument x 1 mentation nomic sequencing data gene ration Expanding the NGS-SA capa ZA-SUN-289862-GO-DIR / Ha Under Imple TF / B8412 city and training staff for ge Post Direct Selection Direct - National 278,571.00 0.00 2022-09-12 2022-09-19 2022-09-16 2022-10-03 2022-12-15 milton NGS STAR96 x 1 unit mentation nomic sequencing data gene ration ZA-SUN-289877-GO-DIR / Ch Expanding the NGS-SA capa Pending Impl emagic 360 automated extra TF / B8412 city and training staff for ge Post Direct Selection Direct - National 115,000.00 0.00 2023-01-16 2023-01-21 2023-02-17 2023-04-28 ementation ction system x 1 Unit at 100 nomic sequencing data gene % Effort ration ZA-SUN-289899-GO-DIR / Ve Expanding the NGS-SA capa Pending Impl rti Thermal Cycler x 1 Unit at TF / B8412 city and training staff for ge Post Direct Selection Direct - National 32,857.00 0.00 2023-01-30 2023-02-10 2023-02-24 2023-04-03 ementation 100% effort nomic sequencing data gene ration ZA-SUN-289900-GO-DIR / Ag Expanding the NGS-SA capa Pending Impl ilent Technology 2100 bioana TF / B8412 city and training staff for ge Post Direct Selection Direct - National 28,571.00 0.00 2023-01-30 2023-02-10 2023-02-24 2023-04-03 ementation lyzer x 1 Unit at 100% effort nomic sequencing data gene ration Expanding the NGS-SA capa ZA-SUN-289985-GO-RFQ / La Request for Quota Single Stage - One E Pending Impl TF / B8412 city and training staff for ge Post Open - National 3,190.00 0.00 2022-10-10 2022-10-28 2022-11-30 b Pipettes x 3 Units tions nvelope ementation nomic sequencing data gene ration ZA-SUN-291115-GO-RFQ / C Expanding the NGS-SA capa Request for Quota Single Stage - One E Pending Impl aptairbio 320 PCR workstatio TF / B8412 city and training staff for ge Post Open - National 8,163.00 0.00 2023-02-10 2023-03-22 2023-05-31 tions nvelope ementation n x 2 units nomic sequencing data gene ration ZA-SUN-291116-GO-RFQ / Cl Expanding the NGS-SA capa Request for Quota Single Stage - One E Pending Impl ass 2 Biosafety cabinet x 2 U TF / B8412 city and training staff for ge Post Open - National 19,680.00 0.00 2023-01-30 2023-03-13 2023-05-19 tions nvelope ementation nits nomic sequencing data gene ration Expanding the NGS-SA capa ZA-SUN-291117-GO-RFQ / T Request for Quota Single Stage - One E Pending Impl TF / B8412 city and training staff for ge Post Open - National 6,767.00 0.00 2023-02-10 2023-03-24 2023-05-26 hermomixer C x 1 Unit tions nvelope ementation nomic sequencing data gene ration ZA-SUN-291118-GO-RFQ / B Expanding the NGS-SA capa Request for Quota Single Stage - One E Pending Impl eckmann Coulter Ultra Centri TF / B8412 city and training staff for ge Post Open - National 20,536.00 0.00 2023-02-10 2023-03-20 2023-05-19 tions nvelope ementation fuge nomic sequencing data gene ration Strengthening the data syst ZA-SUN-291239-GO-RFQ / La ems to share and training pu Pending Impl ptops (Bioinformatic) x 3 uni TF / B8412 Post Direct Selection Direct - National 10,929.00 0.00 2023-01-15 2023-01-20 2023-02-06 2023-03-31 blic health officials and scien ementation ts tists for genomic sequencing data an alysis ZA-SUN-291240-GO-RFQ / Hi Strengthening the data syst gh Performance Computing ( ems to share and training pu Pending Impl TF / B8412 Post Direct Selection Direct - National 150,000.00 0.00 2022-09-12 2022-09-16 2022-10-07 2023-01-31 HPC) server for Bioinformatic blic health officials and scien ementation s x1 tists for genomic sequencing data an alysis Expanding the NGS-SA capa ZA-SUN-291241-GO-RFQ / Pr TF / B8412 city and training staff for ge Post Direct Selection Direct - National 6,428.00 0.00 Canceled 2022-09-12 2022-09-16 2022-10-14 2022-11-30 inter nomic sequencing data gene ration Operationalize the system to ZA-SUN-291242-GO-RFQ / C evaluate diagnostics and va Pending Impl omputers (Bioinformatic anal TF / B8412 Post Direct Selection Direct - National 9,000.00 0.00 2023-01-09 2023-01-20 2023-03-10 2023-05-12 ccine effectiveness against t ementation ysis) - ACEGID x 3 units he variants in Africa ZA-SUN-291243-GO-RFQ / C Expanding the NGS-SA capa Pending Impl omputers (Bioinformatic train TF / B8412 city and training staff for ge Post Direct Selection Direct - National 36,000.00 0.00 2023-01-09 2023-01-20 2023-03-10 2023-05-31 ementation ing lab)-ACEGID x 24 Units nomic sequencing data gene ration ZA-SUN-291424-GO-RFQ / La Expanding the NGS-SA capa Request for Quota Single Stage - One E b: Maintenance, warranties & TF / B8412 city and training staff for ge Post Open - National 28,571.00 0.00 Canceled 2022-09-26 2022-10-24 2022-11-30 tions nvelope licences - KRISP nomic sequencing data gene ration ZA-SUN-291529-GO-RFQ / La Expanding the NGS-SA capa Request for Quota Single Stage - One E Pending Impl boratory Maintenance, warra TF / B8412 city and training staff for ge Post Open - National 68,000.00 0.00 2023-01-16 2023-02-28 2023-04-14 tions nvelope ementation nties and licenses - ACEGID nomic sequencing data gene ration Expanding the NGS-SA capa ZA-SUN-311039-GO-RFQ / La Request for Quota Single Stage - One E Pending Impl TF / B8412 city and training staff for ge Post Open - National 4,929.00 0.00 2022-10-10 2022-11-28 2022-11-30 b Multichannel Pipettes x 3 tions nvelope ementation nomic sequencing data gene ration ZA-SUN-283108-GO-RFQ / R Expanding the NGS-SA capa eagents - qPCR and Sequenci city and training staff for ge Request for Quota Single Stage - One E Pending Impl TF / B8412 Post Limited 66,071.00 0.00 2022-10-17 2022-11-09 2023-05-08 ng and Viral Extraction nomic sequencing data gene tions nvelope ementation for CERI and ACEGID laborat ration ories. ZA-SUN-315327-GO-DIR / La Expanding the NGS-SA capa b: Maintenance, warranties & TF / B8412 city and training staff for ge Post Direct Selection Direct - National 28,571.00 142,064.06 Signed 2022-09-15 2022-09-13 2022-09-20 2022-08-24 2022-10-18 2022-09-13 2023-04-16 licences - KRISP nomic sequencing data gene ration Page 1 Expanding the NGS-SA capa ZA-SUN-291119-GO-RFQ / La Pending Impl TF / B8412 city and training staff for ge Post Direct Selection Direct - National 26,792.00 0.00 2022-09-23 2022-09-27 2022-10-11 2022-12-06 ptops x 9 Units ementation nomic sequencing data gene ration Expanding the NGS-SA capa ZA-SUN-318078-GO-RFQ / Pr Request for Quota Single Stage - One E Pending Impl TF / B8412 city and training staff for ge Post Open - National 6,428.00 0.00 2022-10-06 2022-11-30 2023-05-29 inter tions nvelope ementation nomic sequencing data gene ration NON CONSULTING SERVICES Activity Reference No. / Bid Evaluation Report Loan / Credit N Market Approac Procurement Pro Prequalification Estimated Am Actual Amount Process St Draft Pre-qualification Prequalification Evalu Draft Bidding Docum Specific Procurement Bidding Documents a Proposal Submission / Description Component Review Type Method and Recommendation Signed Contract Contract Completion o. h cess (Y/N) ount (US$) (US$) atus Documents ation Report ent / Justification Notice / Invitation s Issued Opening / Minutes for Award Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual CONSULTING FIRMS Activity Reference No. / Combined Evaluation Loan / Credit N Market Approac Contract Type Estimated Amo Actual Amount Expression of Interest Short List and Draft R Request for Proposals Opening of Technical Evaluation of Technic Description Component Review Type Method Process Status Terms of Reference Report and Draft Neg Signed Contract Contract Completion o. h unt (US$) (US$) Notice equest for Proposals as Issued Proposals / Minutes al Proposal otiated Contract Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual INDIVIDUAL CONSULTANTS Activity Reference No. / Loan / Credit N Market Approac Contract Type Estimated Amo Actual Amount Invitation to Identifie Draft Negotiated Cont Description Component Review Type Method Process Status Terms of Reference Signed Contract Contract Completion o. h unt (US$) (US$) d/Selected Consultant ract Planned Actual Planned Actual Planned Actual Planned Actual Planned Actual ZA-SUN-283113-CS-INDV / In Expanding the NGS-SA capa Individual Consult Direct - Internation fectious Disease Specialist at TF / B8412 city and training staff for ge Post 156,008.00 0.00 Canceled 2022-08-31 2022-08-22 2022-09-30 2022-10-31 2022-11-28 2024-12-31 ant Selection al 50% effort nomic sequencing data gene ration Expanding the NGS-SA capa ZA-SUN-287064-CS-CDS / Bi Individual Consult Pending Impleme TF / B8412 city and training staff for ge Post Open - National 54,149.00 0.00 2022-09-19 2022-11-17 2022-11-25 2022-11-30 2024-12-31 oinformatician at 80% effort ant Selection ntation nomic sequencing data gene ration ZA-SUN-287238-CS-INDV / P Expanding the NGS-SA capa Individual Consult Pending Impleme ostDoc Bioinformatician (1) a TF / B8412 city and training staff for ge Post Open - National 51,500.00 0.00 2022-09-19 2022-11-17 2022-11-25 2022-12-05 2024-12-31 ant Selection ntation t 100% effort nomic sequencing data gene ration ZA-SUN-287247-CS-INDV / P Expanding the NGS-SA capa Individual Consult Under Implement ostDoc Bioinformatician at 1 TF / B8412 city and training staff for ge Post Open - National 51,500.00 0.00 2022-09-19 2022-05-02 2022-11-17 2022-11-25 2022-12-05 2024-12-31 ant Selection ation 00% effort nomic sequencing data gene ration ZA-SUN-287249-CS-INDV / L Expanding the NGS-SA capa Individual Consult Under Implement aboratory Technician (1) at 1 TF / B8412 city and training staff for ge Post Open - National 81,100.00 0.00 2022-08-22 2022-08-25 2022-09-06 2022-07-14 2022-09-13 2022-09-06 2022-10-01 2024-09-30 ant Selection ation 00% effort nomic sequencing data gene ration ZA-SUN-287250-CS-INDV / L Expanding the NGS-SA capa Individual Consult aboratory Technician at 100 TF / B8412 city and training staff for ge Post Open - National 81,100.00 30,212.62 Signed 2022-08-22 2022-08-25 2022-09-06 2022-07-14 2022-09-13 2022-09-06 2022-10-01 2022-09-13 2024-09-30 ant Selection % effort nomic sequencing data gene ration Operationalize the system to ZA-SUN-287517-CS-INDV / P evaluate diagnostics and va Pending Impleme hD: Laboratory Technician at TF / B8412 Post Direct Selection Direct - National 40,000.00 0.00 2022-11-01 2022-11-30 2023-02-28 2025-03-31 ccine effectiveness against t ntation 100% effort he variants in Africa Operationalize the system to ZA-SUN-287522-CS-INDV / P evaluate diagnostics and va Pending Impleme hD: Laboratory Technician at TF / B8412 Post Direct Selection Direct - National 40,000.00 0.00 2022-11-01 2022-11-30 2023-02-28 2025-03-31 ccine effectiveness against t ntation 100% effort he variants in Africa Expanding the NGS-SA capa ZA-SUN-287531-CS-INDV / S Individual Consult Pending Impleme TF / B8412 city and training staff for ge Post Open - National 77,206.00 0.00 2022-08-28 2022-09-30 2022-10-05 2022-11-01 2024-10-31 ample Clerk at 100% effort ant Selection ntation nomic sequencing data gene ration ZA-SUN-287544-CS-INDV / P Project management, monit Individual Consult Under Implement TF / B8412 Post Open - National 77,206.00 0.00 2022-08-28 2022-09-13 2022-09-30 2022-10-05 2022-11-01 2024-10-31 ersonal Assistant at 100% eff oring and evaluation ant Selection ation ort ZA-SUN-288059-CS-INDV / P Expanding the NGS-SA capa Individual Consult Pending Impleme ostDoc: Med Scientist at 100 TF / B8412 city and training staff for ge Post Open - National 103,000.00 0.00 2022-09-19 2022-11-17 2022-11-25 2022-12-05 2024-12-31 ant Selection ntation % nomic sequencing data gene ration ZA-SUN-288053-CS-INDV / P Expanding the NGS-SA capa Individual Consult Pending Impleme ostDoc: Med Scientist at 100 TF / B8412 city and training staff for ge Post Open - National 103,000.00 0.00 2022-09-19 2022-11-17 2022-11-25 2022-12-05 2024-12-31 ant Selection ntation % nomic sequencing data gene ration ZA-SUN-288073-CS-INDV / C Project management, monit Individual Consult onsultant: Environment @ S TF / B8412 Post Open - National 24,000.00 0.00 Canceled 2022-08-26 2022-08-26 2022-10-07 2022-10-28 2022-11-15 2024-11-14 oring and evaluation ant Selection ocial expert @ 20% effort Operationalize the system to ZA-SUN-288075-CS-INDV / R evaluate diagnostics and va Individual Consult Open - Internationa Pending Impleme esearch Associate at 100% ef TF / B8412 Post 80,000.00 0.00 2022-10-16 2022-12-19 2023-01-09 2023-02-13 2025-03-31 ccine effectiveness against t ant Selection l ntation fort he variants in Africa ZA-SUN-315311-CS-INDV / C Project management, monit Individual Consult onsultant: Environment & So TF / B8412 Post Limited 24,000.00 0.00 Under Review 2022-09-12 2022-09-04 2022-09-12 2022-10-03 2022-10-31 2024-10-31 oring and evaluation ant Selection cial expert ZA-SUN-315316-CS-INDV / In Expanding the NGS-SA capa Individual Consult Open - Internationa Under Implement fectious Disease Specialist at TF / B8412 city and training staff for ge Post 156,008.00 0.00 2022-09-12 2022-08-29 2022-09-30 2022-10-14 2022-10-24 2024-12-31 ant Selection l ation 50% effort nomic sequencing data gene ration Page 2